Spatial variability of phytoplankton pigment distributions in the Subtropical South Pacific Ocean: comparison between in situ and predicted data

In the frame of the BIOSOPE cruise in 2004, the spatial distribution and structure of phytoplankton pigments was investigated along a transect crossing the ultra-oligotrophic South Pacific Subtropical Gyre (SPSG) between the Marquesas Archipelago (141° W–8° S) and the Chilean upwelling (73° W–34° S). A High Performance Liquid Chromatography (HPLC) method was improved in order to be able to accurately quantify pigments over such a large range of trophic levels, and especially from strongly oligotrophic conditions. Seven diagnostic pigments were associated to three phytoplankton size classes (pico-, nano and microphytoplankton). The total chlorophyll-α concentrations [TChlα] in surface waters were the lowest measured in the centre of the gyre, reaching 0.017 mg m<sup>−3</sup>. Pigment concentrations at the Deep Chlorophyll Maximum (DCM) were generally 10 fold the surface values. Results were compared to predictions from a global parameterisation based on remotely sensed surface [TChlα]. The agreement between the in situ and predicted data for such contrasting phytoplankton assemblages was generally good: throughout the oligotrophic gyre system, picophytoplankton (prochlorophytes and cyanophytes) and nanophytoplankton were the dominant classes. Relative bacteriochlorophyll-α concentrations varied around 2%. The transition zone between the Marquesas and the SPSG was also well predicted by the model. However, some regional characteristics have been observed where measured and modelled data differ. Amongst these features is the extreme depth of the DCM (180 m) towards the centre of the gyre, the presence of a deep nanoflagellate population beneath the DCM or the presence of a prochlorophyte-enriched population in the formation area of the high salinity South Pacific Tropical Water. A coastal site sampled in the eutrophic upwelling zone, characterised by recently upwelled water, was significantly and unusually enriched in picoeucaryotes, in contrast with an offshore upwelling site where a more typical senescent diatom population prevailed

Towards a merged satellite and in situ fluorescence ocean chlorophyll product

Understanding the ocean carbon cycle requires a precise assessment of phytoplankton biomass in the oceans. In terms of numbers of observations, satellite data represent the largest available data set. However, as they are limited to surface waters, they have to be merged with in situ observations. Amongst the in situ data, fluorescence profiles constitute the greatest data set available, because fluorometers have operated routinely on oceanographic cruises since the 1970s. Nevertheless, fluorescence is only a proxy of the total chlorophyll <i>a</i> concentration and a data calibration is required. Calibration issues are, however, sources of uncertainty, and they have prevented a systematic and wide range exploitation of the fluorescence data set. In particular, very few attempts to standardize the fluorescence databases have been made. Consequently, merged estimations with other data sources (e.g. satellite) are lacking. <br><br> We propose a merging method to fill this gap. It consists firstly in adjusting the fluorescence profile to impose a zero chlorophyll <i>a</i> concentration at depth. Secondly, each point of the fluorescence profile is then multiplied by a correction coefficient, which forces the chlorophyll <i>a</i> integrated content measured on the fluorescence profile to be consistent with the concomitant ocean colour observation. The method is close to the approach proposed by Boss et al. (2008) to correct fluorescence data of a profiling float, although important differences do exist. To develop and test our approach, in situ data from three open ocean stations (BATS, HOT and DYFAMED) were used. Comparison of the so-called "satellite-corrected" fluorescence profiles with concomitant bottle-derived estimations of chlorophyll <i>a</i> concentration was performed to evaluate the final error (estimated at 31%). Comparison with the Boss et al. (2008) method, using a subset of the DYFAMED data set, demonstrated that the methods have similar accuracy. The method was applied to two different data sets to demonstrate its utility. Using fluorescence profiles at BATS, we show that the integration of "satellite-corrected" fluorescence profiles in chlorophyll <i>a</i> climatologies could improve both the statistical relevance of chlorophyll <i>a</i> averages and the vertical structure of the chlorophyll <i>a</i> field. We also show that our method could be efficiently used to process, within near-real time, profiles obtained by a fluorometer deployed on autonomous platforms, in our case a bio-optical profiling float. The application of the proposed method should provide a first step towards the generation of a merged satellite/fluorescence chlorophyll <i>a</i> product, as the "satellite-corrected" profiles should then be consistent with satellite observations. Improved climatologies with more consistent satellite and in situ data are likely to enhance the performance of present biogeochemical models

Substantial energy input to the mesopelagic ecosystem from the seasonal mixed-layer pump

This is the author accepted manuscript. The final version is available from Nature Research via the DOI in this record.The ocean region known as the mesopelagic zone, which is at depths of about 100-1,000 m, harbours one of the largest ecosystems and fish stocks on the planet. Life in this region is believed to rely on particulate organic carbon supplied by the biological carbon pump. Yet this supply appears insufficient to meet mesopelagic metabolic demands. An additional organic carbon source to the mesopelagic zone could be provided by the seasonal entrainment of surface waters in deeper layers, a process known as the mixed-layer pump. Little is known about the magnitude and spatial distribution of this process globally or its potential to transport carbon to the mesopelagic zone. Here we combine mixed-layer depth data from Argo floats with satellite estimates of particulate organic carbon concentrations to show that the mixed-layer pump supplies an important seasonal flux of organic carbon to the mesopelagic zone. We estimate that this process is responsible for a global flux of 0.1-0.5 Pg C yr-1. In high-latitude regions where the mixed layer is usually deep, this flux amounts on average to 23% of the carbon supplied by fast sinking particles, but it can be greater than 100%. We conclude that the seasonal mixed-layer pump is an important source of organic carbon for the mesopelagic zone.UK National Centre for Earth Observation, UK NERCMarie Curie(UK) NERC National Capability in Sustained Observations and Marine ModellingEuropean Research CouncilH2020 ATLANTOS EU projec

The Intraseasonal Dynamics of the Mixed Layer Pump in the Subpolar North Atlantic Ocean: A Biogeochemical‐Argo Float Approach

The detrainment of organic matter from the mixed layer, a process known as the mixed layer pump (ML pump), has long been overlooked in carbon export budgets. Recently, the ML pump has been investigated at seasonal scale and appeared to contribute significantly to particulate organic carbon export to the mesopelagic zone, especially at high latitudes where seasonal variations of the mixed layer depth are large. However, the dynamics of the ML pump at intra‐seasonal scales remains poorly known, mainly because the lack of observational tools suited to studying such dynamics. In the present study, using a dense network of autonomous profiling floats equipped with bio‐optical sensors, we captured widespread episodic ML pump‐driven export events, during the winter and early spring period, in a large part of the subpolar North Atlantic Ocean. The intra‐seasonal dynamic of the ML pump exports fresh organic material to depth (basin‐scale average up to 55 mg C m‐2 d‐1), providing a significant source of energy to the mesopelagic food web before the spring bloom period. This mechanism may sustain the seasonal development of overwintering organisms such as copepods with potential impact on the characteristics of the forthcoming spring phytoplankton bloom through predator‐prey interactions

Detection of coccolithophore blooms with biogeochemical‐argo floats

Coccolithophores (calcifying phytoplankton) form extensive blooms in temperate and subpolar oceans as evidenced from ocean-color satellites. This study examines the potential to detect coccolithophore blooms with BioGeoChemical-Argo (BGC-Argo) floats, autonomous ocean profilers equipped with bio-optical and physicochemical sensors. We first matched float data to ocean-color satellite data of calcite concentration to select floats that sampled coccolithophore blooms. We identified two floats in the Southern Ocean, which measured the particulate beam attenuation coefficient (c(p)) in addition to two core BGC-Argo variables, Chlorophyll-a concentration ([Chl-a]) and the particle backscattering coefficient (b(bp)). We show that coccolithophore blooms can be identified from floats by distinctively high values of (1) the b(bp)/c(p) ratio, a proxy for the refractive index of suspended particles, and (2) the b(bp)/[Chl-a] ratio, measurable by any BGC-Argo float. The latter thus paves the way to global investigations of environmental control of coccolithophore blooms and their role in carbon export. Plain Language Summary Coccolithophores are a group of phytoplankton that form an armor of calcite plates. Coccolithophores may form intense blooms which can be identified from space by so-called ocean-color satellites, providing global images of the color of the surface ocean. BioGeoChemical-Argo (BGC-Argo) floats, robots profiling down to 2,000 m with a variety of physicochemical and bio-optical sensors, present an increasingly attractive and cost-effective platform to study phytoplankton blooms and their impact on oceanic biogeochemical cycles. We show that coccolithophore blooms can be detected by BGC-Argo floats with high confidence, hence providing a new way to study them at the global scale as well as their role in sinking carbon. Key Points We matched profiling float trajectories with ocean-color satellite observations of coccolithophore blooms Two simple bio-optical indices permitted successful identification of coccolithophore blooms from floats in the Southern Ocean A method for identifying coccolithophore blooms at the global scale is proposed using regional thresholds of bio-optical float measurement

Gross community production and metabolic balance in the South Pacific Gyre, using a non intrusive bio-optical method

The very clear waters of the South Pacific Gyre likely constitute an end-member of oligotrophic conditions which remain essentially unknown with respect to its impact on carbon fixation and exportation. We describe a non-intrusive bio-optical method to quantify the various terms of a production budget (Gross community production, community losses, net community production) in this area. This method is based on the analysis of the diel cycle in Particulate Organic Carbon (POC), derived from high frequency measurements of the particle attenuation coefficient <i>c</i><sub>p</sub>. We report very high integrated rates of Gross Community Production within the euphotic layer (average of 846±484 mg C m<sup>−2</sup> d<sup>−1</sup> for 17 stations) that are far above any rates determined using incubation techniques for such areas. Furthermore we show that the daily production of POC is essentially balanced by the losses so that the system cannot be considered as net heterotrophic. Our results thus agree well with geochemical methods, but not with incubation studies based on oxygen methods. We stress to the important role of deep layers, below the euphotic layer, in contributing to carbon fixation when incident irradiance at the ocean surface is high (absence of cloud coverage). These deep layers, not considered up to know, might fuel part of the heterotrophic processes in the upper layer, including through dissolved organic carbon. We further demonstrate that, in these extremely clear and stratified waters, integrated gross community production is proportional to the POC content and surface irradiance via an efficiency index ψ <sub>GCP</sub><sup>*</sup>, the water column cross section for Gross Community Production. We finally discuss our results in the context of the role of oligotrophic gyre in the global carbon budget and of the possibility of using optical proxies from space for the development of growth community rather than primary production global models

Distribution of lipid biomarkers and carbon isotope fractionation in contrasting trophic environments of the South East Pacific

The distribution of lipid biomarkers and their stable carbon isotope composition was investigated on suspended particles from different contrasting trophic environments at six sites in the South East Pacific. High algal biomass with diatom-related lipids (24-methylcholesta-5,24(28)-dien-3β-ol, C<sub>25</sub> HBI alkenes, C<sub>16:4</sub> FA, C<sub>20:5</sub> FA) was characteristic in the upwelling zone, whereas haptophyte lipids (long-chain (C<sub>37</sub>-C<sub>39</sub>) unsaturated ketones) were proportionally most abundant in the nutrient-poor settings of the centre of the South Pacific Gyre and on its easter edge. The dinoflagellate–sterol, 4α-23,24-trimethylcholest-22(<i>E</i>)-en-3β-ol, was a minor contributor in all of the studied area and the cyanobacteria-hydrocarbon, C<sub>17</sub><i>n</i>-alkane, was at maximum in the high nutrient low chlorophyll regime of the subequatorial waters near the Marquesas archipelago. <br><br> The taxonomic and spatial variability of the relationships between carbon photosynthetic fractionation and environmental conditions for four specific algal taxa (diatoms, haptophytes, dinoflagellates and cyanobacteria) was also investigated. The carbon isotope fractionation factor (ε<sub>p</sub>) of the 24-methylcholesta-5,24(28)-dien-3β-ol diatom marker, varied over a range of 16% along the different trophic systems. In contrast, ε<sub>p</sub> of dinoflagellate, cyanobacteria and alkenone markers varied only by 7–10‰. The low fractionation factors and small variations between the different phytoplankton markers measured in the upwelling area likely reveals uniformly high specific growth rates within the four phytoplankton taxa, and/or that transport of inorganic carbon into phytoplankton cells may not only occur by diffusion but also by other carbon concentrating mechanisms (CCM). In contrast, in the oligotrophic zone, i.e. gyre and eastgyre, relatively high ε<sub>p</sub> values, especially for the diatom marker, indicate diffusive CO<sub>2</sub> uptake by the eukaryotic phytoplankton. At these nutrient-poor sites, the lower ε<sub>p</sub> values for haptophytes, dinoflagellates and cyanobacteria indicate higher growth rates or major differences on the carbon uptake mechanisms compared to diatoms

Observing biogeochemical cycles at global scales with profiling floats and gliders: prospects for a global array

Chemical and biological sensor technologies have advanced rapidly in the past five years. Sensors that require low power and operate for multiple years are now available for oxygen, nitrate, and a variety of bio-optical properties that serve as proxies for important components of the carbon cycle (e.g., particulate organic carbon). These sensors have all been deployed successfully for long periods, in some cases more than three years, on platforms such as profiling floats or gliders. Technologies for pH, pCO2, and particulate inorganic carbon are maturing rapidly as well. These sensors could serve as the enabling technology for a global biogeochemical observing system that might operate on a scale comparable to the current Argo array. Here, we review the scientific motivation and the prospects for a global observing system for ocean biogeochemistry

Heterotrophic bacterial production in the eastern South Pacific: longitudinal trends and coupling with primary production

Spatial variation of heterotrophic bacterial production and phytoplankton primary production were investigated across the eastern South Pacific Ocean (−141° W, −8° S to −72° W, −35° S) in November–December 2004. Bacterial production (³H leucine incorporation) integrated over the euphotic zone encompassed a wide range of values, from 43 mg C m⁻² d⁻¹ in the hyper-oligotrophic South Pacific Gyre to 392 mg C m⁻² d⁻¹ in the upwelling off Chile. In the gyre (120° W, 22° S) records of low phytoplankton biomass (7 mg Total Chla m⁻²) were obtained and fluxes of in situ 14C-based particulate primary production were as low as 153 mg C m⁻² d⁻¹, thus equal to the value considered as a limit for primary production under strong oligotrophic conditions. Average rates of ³H leucine incorporation rates, and leucine incorporation rates per cell (5–21 pmol l⁻¹ h⁻¹ and 15–56×10⁻²¹ mol cell⁻¹ h⁻¹, respectively) determined in the South Pacific gyre, were in the same range as those reported for other oligotrophic subtropical and temperate waters. Fluxes of dark community respiration, determined at selected stations across the transect varied in a narrow range (42–97 mmol O2 m⁻² d⁻¹), except for one station in the upwelling off Chile (245 mmol O2 m⁻² d⁻¹). Bacterial growth efficiencies varied between 5 and 38%. Bacterial carbon demand largely exceeded 14C particulate primary production across the South Pacific Ocean, but was lower or equal to gross community production